Full list of my articles on my Google Scholar profile
Published in Phuket, Thailand, 2025
Recommended citation: Hawkins, John. (2025) "Enigme: Generative Text Puzzles for Evaluating Reasoning in Language Models" 11th International Conference on Engineering, Applied Sciences, and Technology (ICEAST), Phuket, Thailand, 2025, pp. 117-121 https://ieeexplore.ieee.org/document/11088210
Published in Jeju, Korea, 2024
Recommended citation: Hawkins, John. and Tivey, David. (2024) "Literature Filtering for Systematic Reviews with Transformers" Proceedings of the 2nd International Conference on Communications, Computing and Artificial Intelligence (CCCAI 2024) https://dl.acm.org/doi/abs/10.1145/3676581.3676582
Published in Hanoi, Vietnam, 2024
Recommended citation: Hawkins, John. (2023) "OAGRE: Outlier Attenuated Gradient Boosted Regression" Proceedings of The Fifth International Conference on Artificial Intelligence and Computational Intelligence (AICI 2024) Hanoi, Vietnam https://link.springer.com/chapter/10.1007/978-3-031-63929-6_15
Published in , 2023
Recommended citation: Hawkins, John. (2023) "Estimating Gaze Duration Error with Eye Tracking Data" Proceedings of the 2023 5th International Conference on Image, Video and Signal Processing Pages 70-75, Mar 25, 2023
Published in Software Impacts, 2021
Recommended citation: Hawkins, John. (2021) "MinViME/Minimum Viable Model Estimator" Software Impacts, Aug 01; Volume 9 https://doi.org/10.1016/j.simpa.2021.100073
Published in CSEA 2020, 2020
Recommended citation: Hawkins, John. (2020) "Minimum Viable Model Estimates for Machine Learning Projects " Proceedings of the 6th International Conference on Computer Science, Engineering And Applications (CSEA 2020), Dec 18~19; 10(18) 10.5121/csit.2020.101803
Published in PLoS One, 2016
Recommended citation: Ruiz-Gómez, Gloria., Hawkins, John., Philipp, Jenny., Künze, Georg., Löser, Reik., Fahmy, Karim., and Pisabarro, M. Teresa. (2016) "Rational Structure-Based Rescaffolding Approach to De Novo Design of Interleukin 10 (IL-10) Receptor-1 Mimetics" PLoS One. Apr 28;11(4) http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0154046
Published in IEEE/ACM transactions on computational biology and bioinformatics, 2012
Recommended citation: Hawkins, J., Zhu, H., Teyra, J., and Pisabarro, M. Teresa. (2012). "Reduced False Positives in PDZ Binding Prediction using Sequence and Structural Descriptors." IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM. https://www.ncbi.nlm.nih.gov/pubmed/22508908
Published in The Journal of Neuroscience, 2010
Recommended citation: Michael Piper, Guy Barry, John Hawkins, Sharon Mason, Charlotta Lindwall, Erica Little, Anindita Sarkar, Aaron Smith, Randal Moldrich, Glen Boyle, Shubha Tole, Richard Gronostajski, Timothy Bailey, and Linda Richards. (2010). "NFIA Controls Telencephalic Progenitor Cell Differentiation through Repression of the Notch Effector Hes1." The Journal of Neuroscience, July 7, 2010, 30(27):9127-9139.. https://www.ncbi.nlm.nih.gov/pubmed/20610746
Published in Proteins: structure, Function, and Bioinformatics, 2010
Recommended citation: Teyra, J., Hawkins, J., Zhu, H., and Pisabarro, M. Teresa. (2010). "Studies on the inference of protein binding regions across fold space based on structural similarities." Proteins: structure, Function, and Bioinformatics. 69(3); 606-616.. https://www.ncbi.nlm.nih.gov/pubmed/21069715
Published in Bioinformatics, 2009
Recommended citation: Hawkins, J., Grant; C., Noble, W.S., and Bailey, T.L. (2009). "Assessing phylogenetic motif models for predicting transcription factor binding sites." Bioinformatics 25, i339-i347.. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2687955/
Published in RECOMB, 2008
Recommended citation: Hawkins, J., and Bailey, T.L. (2008). "The Statistical Power of Phylogenetic Motif Models." RECOMB 2008 Proceedings; 112-126. . https://link.springer.com/chapter/10.1007/978-3-540-78839-3_10
Published in Journal of Proteome Research, 2007
Recommended citation: Hawkins, J., Davis, L. and Boden, M., (2007). "Predicting Nuclear Localization" Journal of Proteome Research. 6(4); 1402-1409.. https://link.springer.com/chapter/10.1007/978-3-540-78839-3_10
Published in Proteins: structure, Function, and Bioinformatics, 2007
Recommended citation: Hawkins, J., Mahony, D., Maetschke, S., Wakabayashi, M., Teasdale, R. and Boden, M., (2007). "Identifying Novel Peroxisomal Proteins" Proteins: structure, Function, and Bioinformatics. 69(3); 606-616.. https://link.springer.com/chapter/10.1007/978-3-540-78839-3_10