Published in , 2024
Selected Publications
Full list of my articles on my Google Scholar profile
Estimating Gaze Duration Error with Eye Tracking Data
Published in , 2023
Recommended citation: Hawkins, John. (2023) "Estimating Gaze Duration Error with Eye Tracking Data" Proceedings of the 2023 5th International Conference on Image, Video and Signal Processing Pages 70-75, Mar 25, 2023
MinViME/Minimum Viable Model Estimator
Published in Software Impacts, 2021
Recommended citation: Hawkins, John. (2021) "MinViME/Minimum Viable Model Estimator" Software Impacts, Aug 01; Volume 9 https://doi.org/10.1016/j.simpa.2021.100073
Minimum Viable Model Estimates for Machine Learning Projects
Published in CSEA 2020, 2020
Recommended citation: Hawkins, John. (2020) "Minimum Viable Model Estimates for Machine Learning Projects " Proceedings of the 6th International Conference on Computer Science, Engineering And Applications (CSEA 2020), Dec 18~19; 10(18) 10.5121/csit.2020.101803
Rational Structure-Based Rescaffolding Approach to De Novo Design of Interleukin 10 (IL-10) Receptor-1 Mimetics
Published in PLoS One, 2016
Recommended citation: Ruiz-Gómez, Gloria., Hawkins, John., Philipp, Jenny., Künze, Georg., Löser, Reik., Fahmy, Karim., and Pisabarro, M. Teresa. (2016) "Rational Structure-Based Rescaffolding Approach to De Novo Design of Interleukin 10 (IL-10) Receptor-1 Mimetics" PLoS One. Apr 28;11(4) http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0154046
Reduced False Positives in PDZ Binding Prediction using Sequence and Structural Descriptors
Published in IEEE/ACM transactions on computational biology and bioinformatics, 2012
Recommended citation: Hawkins, J., Zhu, H., Teyra, J., and Pisabarro, M. Teresa. (2012). "Reduced False Positives in PDZ Binding Prediction using Sequence and Structural Descriptors." IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM. https://www.ncbi.nlm.nih.gov/pubmed/22508908
NFIA Controls Telencephalic Progenitor Cell Differentiation through Repression of the Notch Effector Hes1
Published in The Journal of Neuroscience, 2010
Recommended citation: Michael Piper, Guy Barry, John Hawkins, Sharon Mason, Charlotta Lindwall, Erica Little, Anindita Sarkar, Aaron Smith, Randal Moldrich, Glen Boyle, Shubha Tole, Richard Gronostajski, Timothy Bailey, and Linda Richards. (2010). "NFIA Controls Telencephalic Progenitor Cell Differentiation through Repression of the Notch Effector Hes1." The Journal of Neuroscience, July 7, 2010, 30(27):9127-9139.. https://www.ncbi.nlm.nih.gov/pubmed/20610746
Studies on the inference of protein binding regions across fold space based on structural similarities
Published in Proteins: structure, Function, and Bioinformatics, 2010
Recommended citation: Teyra, J., Hawkins, J., Zhu, H., and Pisabarro, M. Teresa. (2010). "Studies on the inference of protein binding regions across fold space based on structural similarities." Proteins: structure, Function, and Bioinformatics. 69(3); 606-616.. https://www.ncbi.nlm.nih.gov/pubmed/21069715
Assessing phylogenetic motif models for predicting transcription factor binding sites
Published in Bioinformatics, 2009
Recommended citation: Hawkins, J., Grant; C., Noble, W.S., and Bailey, T.L. (2009). "Assessing phylogenetic motif models for predicting transcription factor binding sites." Bioinformatics 25, i339-i347.. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2687955/
The Statistical Power of Phylogenetic Motif Models
Published in RECOMB, 2008
Recommended citation: Hawkins, J., and Bailey, T.L. (2008). "The Statistical Power of Phylogenetic Motif Models." RECOMB 2008 Proceedings; 112-126. . https://link.springer.com/chapter/10.1007/978-3-540-78839-3_10
Predicting Nuclear Localization
Published in Journal of Proteome Research, 2007
Recommended citation: Hawkins, J., Davis, L. and Boden, M., (2007). "Predicting Nuclear Localization" Journal of Proteome Research. 6(4); 1402-1409.. https://link.springer.com/chapter/10.1007/978-3-540-78839-3_10
Identifying Novel Peroxisomal Proteins
Published in Proteins: structure, Function, and Bioinformatics, 2007
Recommended citation: Hawkins, J., Mahony, D., Maetschke, S., Wakabayashi, M., Teasdale, R. and Boden, M., (2007). "Identifying Novel Peroxisomal Proteins" Proteins: structure, Function, and Bioinformatics. 69(3); 606-616.. https://link.springer.com/chapter/10.1007/978-3-540-78839-3_10